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3d-force-graph

3D force-directed graph component using ThreeJS/WebGL

automaticanalysis

Automatic analysis

bigbrainwarp

boutiques

A cross-platform descriptive command-line framework for applications

brainspace

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

cbig

clinica

Software platform for clinical neuroimaging studies

course-content

Summer course content for Neuromatch Academy

deep-image-prior

Image restoration with neural networks but without learning.

deoldify

A Deep Learning based project for colorizing and restoring old images (and video!)

ferretome

Ferretome Ferret brain collation database

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

gradient_analysis

graphvar_2.0

GitHub for GraphVar 2.0: A user-friendly toolbox for machine learning on functional connectivity measures.

hbp-validation-framework

landmark-reg

Landmark based registration of brain imaging volumes

mindboggle

Automated anatomical brain label/shape analysis software (+ website)

mricrogl

GLSL volume ray casting rendering: compiled versions available from NITRC. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.

nbs-predict

A prediction-based extension of network-based statistics.

neat-python

Python implementation of the NEAT neuroevolution algorithm

nest-simulator

The NEST simulator

netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

neuroshapes

Open schemas for F.A.I.R. neuroscience data

nh2020-jupyterhub

hub.neurohackademy.org: Deployment config, docker image, documentation.

ohbm2020-posters

Centralized registry of Jitsi rooms and pdfs for OHBM 2020 posters.

pysurfer

Cortical neuroimaging visualization in Python

pysurfing

Visualizing with Freesurfer using Python

resources

A collaborative list of resources for Computational Neuroscience

restream

Stream your reMarkable screen over SSH.

tvb-framework

The Virtual Brain framework. Requires tvb-library