TypeError: 'Series' objects are mutable, thus they cannot be hashed about icd-prediction-mimic HOT 6 CLOSED

Even after updating pandas to 1.1.1 , I had the same Type error issue.

After updating the code as @dsevero suggested, It works fine.

Thanks

from icd-prediction-mimic.

Hi, @NarenInD. Thanks for reaching out.

Judging from the error message, it might be an issue with the version of pandas. Would you mind telling us what version you are using? You can check it by running import pandas; print(pandas.__version__) in the python interpreter.

@arthurreys it might be safer to replace

df.query("HADM_ID.isin(@hadm_ids[0])")

with

df[df['HADM_ID'].isin(hadm_ids[0])]

@NarenInD you can also try the above to see if it helps.

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@dsevero

The pandas version is 0.25.3

Also , I replaced the following line as you suggested, but didn't work. It throws NameError: name 'df' is not defined

self.all_icds_train = utils.make_icds_histogram(self.df.query("HADM_ID.isin(@hadm_ids[0])")).index.tolist()

self.all_icds_train = utils.make_icds_histogram(self.df[df['HADM_ID'].isin(hadm_ids[0])]).index.tolist()

The same mutable issue also gets arised in this line of dataset.py

((self.x_train, self.y_train),
         (self.x_val, self.y_val),
         (self.x_test, self.y_test)) = [
             (self.df.query("HADM_ID.isin(@ids)").TEXT, 
             self.mlb.transform(self.df.query("HADM_ID.isin(@ids)").ICD9_CODE))
             for ids in hadm_ids
             ]

from icd-prediction-mimic.

@NarenInD, in the first case it should be:

self.df[self.df['HADM_ID'].isin(hadm_ids[0])]

in the second, use this:

((self.x_train, self.y_train),
         (self.x_val, self.y_val),
         (self.x_test, self.y_test)) = [
             (self.df[self.df['HADM_ID'].isin(ids)].TEXT, 
             self.mlb.transform(self.df[self.df['HADM_ID'].isin(ids)].ICD9_CODE))
             for ids in hadm_ids
             ]

have you tried updating your pandas version with pip or conda?

with pip: pip install --upgrade pip

from icd-prediction-mimic.

Hello @NarenInD!

I've created a new branch issue-5 and added the suggested changes from @dsevero. You can checkout to that branch in order to test the modifications.

As already stated, you could also try updating your current pandas version.

Please let us know if it works for you!

from icd-prediction-mimic.

Good to know! If anything else comes up, let us know :)

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